This page is incomplete and a placeholder for the API reference. It will be updated with more details and examples.
FQRecord*: Main type for FASTQ/FASTA records with string fields
name*: Sequence name/ID (string)comment*: Optional comment (string)sequence*: The sequence (string)quality*: Quality string for FASTQ (string)status, lastChar: Internal fieldsFQRecordPtr*: Pointer-based version for more efficient memory usage
name*: Sequence name/ID (ptr char)comment*: Optional comment (ptr char)sequence*: The sequence (ptr char)quality*: Quality string for FASTQ (ptr char)iterator readFQ*(path: string): FQRecord:
Parses FASTQ/FASTA records from a file, converting to strings
iterator readFQPtr*(path: string): FQRecordPtr:
Memory-efficient version using pointers (faster but requires careful handling)
proc $*(rec: FQRecord): string:
Formats a record as a FASTA/FASTQ string
proc $*(rec: FQRecordPtr): string:
Formats a pointer-based record as a FASTA/FASTQ string
FQRecord*: Record type for FASTQ/FASTA data
sequence, quality, name, comment: String fieldsstatus, lastChar: Internal fieldsBufio*[T]: Buffered reader for efficient file reading
proc readFastx*[T](f: var Bufio[T], r: var FQRecord): bool:
Parses a single FASTQ/FASTA record from a buffer
proc xopen*[T](fn: string, mode: FileMode = fmRead, sz: int = 0x10000): Bufio[T]:
Opens a file with buffered reading
proc close*[T](f: var Bufio[T]): int:
Closes a buffered file
proc eof*[T](f: Bufio[T]): bool:
Checks if the file has reached EOF
proc readLine*[T](f: var Bufio[T], buf: var string): bool:
Reads a line from a buffered file
GzFile*: Type for handling gzipped filesInterval*[S,T]: Generic interval type with interval tree operations