We deliver 300+ hours of training every year, including formal classes, workshops, hackathons, open-houses and 1:1 training.
Here we list some regular activities that have a companion website:
Technical
- Bioinformatics from the Command Line - An introduction to surviving the Terminal interface and start running bioinformatics tools
- Using the NBI-HPC - Slurm, Conda, Singularity. If you used a cluster before meet our cluster setup, if not let’s have a quick intro to it
Microbial genomics
- Whole metagenome sequencing - QC, host removal, taxonomic and functional classification, de novo assembly binning and some R code to make plots
- Viromics workshop - Mine phages in metagenomes, derepliate and get a vOTU table (EBAME workshop)
- Metabarcoding: from reads to counts - Using DADA2 and modeling NextSeq2000 binned quality errors
- Metabarcoding: from counts to diversity - Importing to Phyloseq, filtering tables, alpha- and beta-diversity, composition visualisation, intro to MaAsLin3
Regular opportunities
- Ask a bioinformatician - Monthly open house, usually the first Tuesday of the month (morning)
- Data Science Group - Monthly meeting about Data Science
