dadaist2-importq2

dadaist2-importq2 - create a PhyloSeq object from a set of Qiime2 artifacts.

Author

Andrea Telatin andrea.telatin@quadram.ac.uk

Synopsis

dadaist2-importq2 [options] 

Parameters

• -t, –feature-table ARTIFACT

  The feature table (e.g. from DADA2)

• -m, –metadata-file FILE

  The metadata file used by Qiime2

• -e –tree ARTIFACT

  Rooted tree artifact.

• -x –taxonomy ARTIFACT

  Taxonomy table artifact.

• -r, –rep-seqs ARTIFACT

  Representative sequences (e.g. from DADA2)

• -o, –output-phyloseq FILE

  The filename for the PhyloSeq object to produce (default: phyloseq.rds)

• –version

  Print version and exit.

Source code and documentation

The program is freely available at https://quadram-institute-bioscience.github.io/dadaist2 released under the MIT licence. The website contains further DOCUMENTATION.